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Home » Gluten Free Breakfast Recipes

Easy Make Ahead Egg Muffins

Oct 30, 2025 by Thriving Gluten Free · This post may contain affiliate links · 2 Comments

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These Easy Make Ahead Egg Muffins are one of our favorite grab-and-go breakfasts for busy mornings! Prep on the weekend then heat and go during the week. They're packed with protein and loaded with flavor from your favorite veggies and breakast meats. Gluten-Free, Dairy-Free, Paleo and Whole30 friendly!

breakfast egg muffin cups gluten-free

Easy Breakfast Egg Muffins

These egg muffins are protein packed and loaded with lots of nutritious veggies. The best part is how versatile they are! You can mix and match the veggies or switch up your protein choice. You'll never have the same egg muffin twice.

What ingredients do I need to make this Egg Muffin Recipe?

Be sure to have a muffin pan ready. I love using a silicone muffin pan because it prevents sticking, so the muffins pop right out of the pan!

Here's what you'll need:

  • Eggs. 12 eggs fills up the muffin pan perfectly so you end up with 12 muffins.
  • Seasonings: Salt, pepper and garlic powder

Optional Veggies and Breakfast Meats

Choose your favorites or use whatever you have on hand. Here are some ideas:

  • Chopped onions, bell peppers or spinach.
  • Ground sausage, cooked and crumbled bacon, diced ham.

Pictured here, I used Bob Evans naturally ground sausage and chopped fresh spinach. I have to keep our egg muffins simple so my picky kids will eat them!

This healthy breakfast recipe can be easily doubled to feed a crowd!

egg muffins recipe gluten free breakfast

How do you make this egg cup recipe?

Step 1: Preheat & Prep

Preheat your oven to 350°F (175°C). Lightly grease a 12-cup muffin tin with olive oil or cooking spray to prevent sticking.

Step 2: Whisk the Eggs

In a large mixing bowl, whisk together the eggs and seasonings until smooth and well combined.

Step 3: Add the Fillings

Stir in your chopped spinach and cooked bacon or sausage if using. You can also divide the fillings into the muffin tin first and then pour the egg mixture over top for even distribution.

Step 4: Bake

Fill each muffin cup about ¾ full. Bake for 18-22 minutes, or until the egg muffins are set and slightly golden on top.

Step 5: Cool & Serve

Let the muffins cool for a few minutes before removing them from the tin. Serve warm, or store for later.

How do you reheat egg muffins?

The easiest and quickest way to reheat egg muffins is in the microwave. I cook them for only about 30 seconds(depending on your microwave) just until they're heated through.

Storage & Meal Prep Tips

  • Refrigerator: Store in an airtight container for up to 4 days. Reheat in the microwave for 20-30 seconds.
  • Freezer: Wrap individually and freeze for up to 2 months. Thaw overnight in the fridge or microwave directly from frozen.
  • On-the-Go: Pack in a lunchbox for a protein-packed snack or light lunch.

I make these breakfast muffins weekly. They're the perfect healthy start to the day and the protein keeps our bellies full all morning long.

If you've tried this recipe, be sure to tag me on Instagram @thrivingglutenfree so I can see how it turned out!

Let's eat!

egg muffins healthy breakfast recipes
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Make-Ahead Egg Muffins

This easy make-ahead egg muffin recipe is a quick and healthy breakfast option for busy mornings. They're protein packed and loaded with veggies & your favorite breakfast meats.
Prep Time10 minutes mins
Cook Time20 minutes mins
Total Time30 minutes mins
Course: Breakfast
Cuisine: American, gluten-free
Keyword: egg muffin cups, egg muffins, eggs
Servings: 12 muffins

Equipment

  • Muffin Tin

Ingredients

  • 12 Eggs
  • ½ teaspoon Salt
  • ¼ teaspoon Garlic powder
  • ¼ teaspoon Pepper
  • Oil for greasing the pan

Optional Vegetables & Meats

  • ¼ cup Onion diced
  • ½ cup Bell Peppers diced
  • ½ cup Fresh Spinach roughly chopped
  • Breakfast Meat crumbled cooked breakfast sausage, cooked and crumbled bacon, diced ham
  • ½ cup Regular or Vegan Cheese shredded

Instructions

  • Preheat oven to 350° and grease a muffin pan with oil.
  • In a large bowl, whisk eggs by hand with a fork. Add spices- mix well.
  • Stir in your prefered meat, veggies and/or cheese into the egg mixture Alternatively, you can divide your veggies and meat into the muffin cups FIRST, then add the eggs on top. Either way works well!
  • Divide the egg mixture evenly into greased muffin tins ¾ of the way full.
  • Bake about 20 minutes until browned around the edges and eggs are set. Serve immediately or store in the refrigerator until ready to eat.
Tried this recipe?Mention @thrivingglutenfree or #thrivingglutenfree!

Looking for more gluten free breakfast ideas? Check out these recipes!

  • Easy Almond Flour Crepes
  • Upside Down Tater Tot Breakfast Casserole
  • Fluffy Gluten-Free Pancakes
  • Sweet Potato Hash With Peppers & Onions
  • Grain Free Cassava Flour Waffles

More Gluten Free Breakfast Recipes

  • homemade gluten free waffles recipe
    Easy Gluten Free Waffles (Crispy Outside, Fluffy Inside!)
  • gluten free green pancakes for st. patrick's day
    Gluten Free Mint Chocolate Chip Pancakes
  • gluten free peach overnight oats recipe
    Easy & Creamy Peach Overnight Oats for Meal Prep
  • gluten free pumpkin pancakes recipe with cinnamon butter
    Gluten Free Pumpkin Pancakes with Homemade Cinnamon Butter

Comments

  1. chefkreso says

    July 15, 2018 at 5:38 pm

    This is an amazing breakfast idea, it has all the right ingredients! 😀

    Reply
    • thrivingglutenfree says

      July 18, 2018 at 2:06 am

      Exactly! Everything you need to start the day right 🙂

      Reply

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thriving gluten free recipes for those with celiac disease and gluten intolerance

Hi, I'm Debby! The recipe creator, mom and blogger behind Thriving Gluten Free. Our oldest daughter was diagnosed with Celiac Disease in 2011, so we've been navigating gluten-free living ever since. I love to share our favorite recipes, products and tips to help make your gluten-free life easy, healthy and delicious!

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