Looking for a sweet treat that’s both satisfying and sneakily healthy? This gluten free chocolate chip zucchini muffins recipe is exactly what you need. They’re light, fluffy, and loaded with chocolate chips and freshly grated zucchini—perfect for breakfast, a midday snack, or even dessert. Whether you’re gluten free by necessity or by choice, this recipe brings comfort and nutrition in every bite.

Why you'll love these healthy gluten free zucchini muffins!
The combination of chocolate and zucchini muffins may sound unusual to some, but zucchini adds moisture and nutrients without overpowering the flavor. Plus, it’s a great way to sneak vegetables into your diet (or your kids’!). The chocolate chips melt into the batter to create gooey pockets of sweetness, balancing the mild taste of zucchini.
Ingredient List!
My guess is that most of you will already have some of these ingredients in your house, making your grocery trip much easier! Here is what you'll need...
- Gluten Free Flour
- Egg
- Avacado Oil
- Granulated Sugar
- Brown Sugar
- Baking Powder
- Baking Soda
- Salt
- Vanilla Extract
- Ground Cinnamon
- Shredded Zucchini
- Chocolate Chips
If you love making muffins for a healthy snack, I know you'll love these Lemon Poppy Seed Muffins and these Almond Flour Banana Bread Muffins too!
Now Let's Get to the Baking Steps
This simple recipe only has a few steps! The first being to preheat your oven to 350 degrees.
While your oven preheats, take a muffin tin and set it aside. In a large bowl, mix together the wet ingredients then add the dry ingredients to form a batter. Once you have your mixture, fold in the shredded pieces of zucchini and stir in the chocolate chips.
Pour the batter into your greased muffin tin and place in the oven to bake for about 25 minutes. And just like that you have your Gluten Free Chocolate Chip Zucchini Muffins rady to go for a snack, dessert or treat any time of day!
Optional Variations
- Want a loaf instead of muffins? Pour the batter into a greased loaf pan and bake for 45–55 minutes to make a chocolate chip zucchini loaf.
- For extra texture and nutrition, toss in a handful of chopped walnuts or pecans.
- Use dairy-free chocolate chips for a completely dairy-free treat.
Time For you To Give These Delicious Zucchini Muffins A Try!
I hope you enjoy this super simple and quick muffin recipe! It is a favorite of mine I am happy to share with you as well!
If you've tried this recipe, please leave a comment below and tag me on Instagram @thrivingglutenfree with pictures of your creation! Below is where you can find the entire recipe. I hope you enjoy, and come back soon for more easy and delicious gluten free recipes to try!
Let's Bake!
Gluten Free Chocolate Chip Zucchini Muffins
Equipment
Ingredients
- 1½ cups Gluten Free 1:1 Flour
- 1 Egg
- ½ cup Oil neutral tasting oil, I like to use avocado oil
- ½ cup Granulated Sugar
- ¼ cup Packed Brown Sugar
- ½ teaspoon Baking Powder
- ½ teaspoon Baking Soda
- ½ tsp Salt
- 1 teaspoon Vanilla Extract
- 1 teaspoon Ground Cinnamon
- 2 cups Shredded Zucchini
- 1 cup Chocolate Chips
Instructions
- Preheat oven to 350°.
- In a large bowl, mix together the wet ingredients then add the dry ingredients to form a batter. Fold in the shredded zucchini and stir in the chocolate chips.
- Pour the batter into a greased or lined muffin tin then bake for about 25 minutes.
- Cool before serving.
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